Terioloogia õppetooli uuemad teaduspublikatsioonid (alates aastast 2014)
Terioloogia töörühm on aastatel 2014-2019 avaldanud kokku 58 teaduspublikatsiooni (kategooria 1.1)
2019
1) Laurimäe T, Kinkar L, Varcasia A, Dessi G, Sgroi G, D’Alessio N, Veneziano V, Saarma U. 2019. First detection of zoonotic tapeworm Echinococcus granulosus sensu lato genotype G7 in continental Italy. Parasitology Research 118: 2193–2201. https://doi.org/10.1007/s00436-019-06346-2
2) Sgroi G, Varcasia A, Dessi G, D'Alessio N, Tamponi C, Saarma U, Laurimäe T, Kinkar L, Santoro M, Caputo V, Sarnelli P, Fusco G, Varuzza P, Fioretti A, Scala A, Veneziano V. 2019. Cystic echinococcosis in wild boars (Sus scrofa) from southern Italy: epidemiological survey and molecular characterization. International Journal for Parasitology: Parasites and Wildlife 9: 305-311. https://doi.org/10.1016/j.ijppaw.2019.04.013
3) Donfrancesco V, Ciucci P, Salvatori V, Benson D, Andersen LW, Bassi E, Blanco JC, Boitani L, Caniglia R, Canu A, Capitani C, Chapron G, Czarnomska S, Fabbri E, Galaverni M, Galov A, Gimenez O, Godinho R, Greco C, Hindrikson M, Huber D, Hulva P, Jedrzejewski W, Kusak J, Linnell J, Llaneza L, Lopez‐Bao JV, Männil P, Marucco F, Mattioli L, Milanesi P, Milliret C, Myslajek R, Ordiz A, Palacios Sanchez V, Pedersen HC, Pertoldi C, Pilot M, Randi E, Rodriguez A, Saarma U, Sand H, Scandura M, Stronen AV, Tsingarska E, Mukherjee N. 2019. Unravelling the Scientific Debate on How to Address Wolf‐Dog Hybridization in Europe. Frontiers in Ecology and Evolution 7:175. https://doi.org/10.3389/fevo.2019.00175
4) Kinkar L, Korhonen PK, Cai H, Gauci CG, Lightowlers MW, Saarma U, Jenkins DJ, Li J, Li J, Young ND, Gasser RB. 2019. Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1. Parasites & Vectors 12:238. https://doi.org/10.1186/s13071-019-3492-x
5) Laurimäe T, Kinkar L, Romig T, Umhang G, Casulli A, Omer RA, Sharbatkhori M, Mirhendi H, Ponce-Gordo F, Lazzarini LE, Soriano SV, Varcasia A, Rostami-Nejad M, Andresiuk V, Maravilla P, Gonzalez LM, Dybicz M, Gawor J, Šarkunas M, Šnabel V, Kuzmina T, Kia EB, Saarma U. 2019 Analysis of nad2 and nad5 enables reliable identification of genotypes G6 and G7 within the species complex Echinococcus granulosus sensu lato. Infection, Genetics and Evolution, 74:103941. https://doi.org/10.1016/j.meegid.2019.103941
6) Tammeleht E, Kull A, Pärna K. 2019. Assessing the importance of protected areas in human-dominated lowland for brown bear (Ursus arctos) winter denning. Mammal Research
https://doi.org/10.1007/s13364-019-00447-0
7) Keis M, Tammeleht E, Valdmann H, Saarma U. 2019. Ants in brown bear diet, and discovery of a new ant species for Estonia from brown bear scats. Hystrix, the Italian Journal of Mammalogy https://doi.org/10.4404/hystrix-00168-2019
8) Tull A, Moks E, Laurimaa L, Keis M, Süld K. 2019. Endoparasite infection hotspots in Estonian urban areas. Journal of Helminthology (accepted)
9) Anijalg P, Remm J, Tammeleht E, Keis M, Valdmann H, Saarma U. 2019. Ongoing recovery of a brown bear population from a century-old severe bottleneck: insights from population genetic and spatially explicit analyses. Conservation Genetics ,
https://doi.org/10.1007/s10592-019-01229-6
10) Selonen V, Remm J, Hanski IK, Henttonen H, Huitu O, Jokinen M, Korpimäki E, Mäkelä A, Sulkava R, Wistbacka R. 2019. Population fluctuations and spatial synchrony in an arboreal rodent. Oecologia, https://doi.org/10.1007/s00442-019-04537-3
2018
1) Anijalg P, Ho SYW, Davison J, Keis M, Tammeleht E, Bobowik K, Tumanov IL, Saveljev AP, Lyapunova EA, Vorobiev AA, Markov NI, Kryukov AP, Kojola I, Swenson JE, Hagen SB, Eiken HG, Paule L, Saarma U. 2018. Large-scale migrations of brown bears in Eurasia and to North America during the Late Pleistocene. Journal of Biogeography, 45, 394–405. https://doi.org/10.1111/jbi.13126
2) Tammeleht E, Kuuspu M. 2018. Effect of competition and landscape characteristics onmesocarnivore cohabitation in badger setts. Journal of Zoology, 305: 8–16. https://doi.org/10.1111/jzo.12529
3) Plumer L, Talvi T, Männil P, Saarma U. 2018. Assessing the roles of wolves and dogs in livestock predation with suggestions for mitigating human-wildlife conflict and conservation of wolves. Conservation Genetics, 19: 665–672. https://doi.org/10.1007/s10592-017-1045-4
4) Oja R, Pass E, Soe E, Ligi K, Anijalg P, Laurimaa L, Saarma U, Lõhmus A, Valdmann H. 2018. Increased nest predation near protected capercaillie leks: a caveat against small reserves. European Journal of Wildlife Research, 64: 6. https://doi.org/10.1007/s10344-018-1165-2
5) Schregel J*, Remm J*, Eiken HG, Swenson JE, Saarma U, Hagen SB. 2018. Multi-level patterns in population genetics: variogram series detects hidden isolation-by-distance-dominated structure of Scandinavian brown bears (Ursus arctos). Methods in Ecology and Evolution, 9:1324–1334. https://doi.org/10.1111/2041‐210X.12980
*equal first authors
6) Lindman, L, Remm, J, Meister H, Tammaru, T. 2018. Host plant and habitat preference of Euphydryas maturna (Lepidoptera: Nymphalidae, Melitaeinae): evidence from northern Europe. Ecological Entomology, 43: 102−113. https://doi.org/10.1111/een.12474
7) Kinkar L, Laurimäe T, Balkaya I, Casulli A, Zait H, Irshadullah M, Sharbatkhori M, Mirhendi H, Rostami Nejad M, Ponce-Gordo F, Rehbein S, Kia EB, Simsek S, Šnábel V, Umhang G, Varcasia A, Saarma U. 2018. Genetic diversity and phylogeography of the elusive, but epidemiologically important Echinococcus granulosus sensu stricto genotype G3. Parasitology, 145: 1613–1622. https://doi.org/10.1017/S0031182018000549
8) Kinkar L, Laurimäe T, Acosta-Jamett G, Andresiuk V, Balkaya I, Casulli A, Gasser RB, van der Giessen J, Gonzalez LM, Haag KL, Zait H, Irshadullah M, Jabbar A, Jenkins DJ, Kia EB, Manfredi MT, Mirhendi H, M’rad S, Rostami Nejad M, Oudni-M’rad M, Pierangeli NB, Ponce-Gordo F, Rehbein S, Sharbatkhori M, Simsek S, Soriano SV, Sprong H, Šnabel V, Umhang G, Varcasia A, Saarma U. 2018. Global phylogeography and genetic diversity of the zoonotic tapeworm Echinococcus granulosus sensu stricto genotype G1. International Journal for Parasitology, 48: 729–742. https://doi.org/10.1016/j.ijpara.2018.03.006
9) Laurimäe T, Kinkar L, Moks E, Romig T, Omer RA, Casulli A, Umhang G, Bagrade G, Irshadullah M, Sharbatkhori M, Mirhendi H, Ponce-Gordo F, Soriano SV, Varcasia A, Rostami-Nejad M, Andresiuk V, Saarma U. 2018. Molecular phylogeny based on six nuclear genes suggests that Echinococcus granulosus sensu lato genotypes G6/G7 and G8/G10 can be regarded as two distinct species. Parasitology, 145: 1929–1937. https://doi.org/10.1017/S0031182018000719
10) Laurimäe T, Kinkar L, Romig T, Omer RA, Casulli A, Umhang G, Gasser RB, Jabbar A , Sharbatkhori M, Mirhendi H, Ponce-Gordo F, Lazzarini LE, Soriano SV, Varcasia A, Rostami Nejad M, Andresiuk V, Maravilla P, Gonzalez LM, Dybicz M, Gawor J, Šarkunas M, Šnabel V, Kuzmina T and Saarma U. 2018. The benefits of analysing complete mitochondrial genomes: deep insights into the phylogeny and population structure of Echinococcus granulosus sensu lato genotypes G6 and G7. Infection, Genetics & Evolution, 64: 85-94. https://doi.org/10.1016/j.meegid.2018.06.016
11) Barlow A, Cahill JA, Hartmann S, Theunert C, Xenikoudakis G, Fortes GG, Paijmans JLA, Rabeder G, Frischauf C, Grandal-d'Anglade A, García-Vázquez A, Murtskhvaladze M, Saarma U, Anijalg P, Skrbinšek T, Bertorelle G, Gasparian B, Bar-Oz G, Pinhasi R, Slatkin M, Dalén L, Shapiro B, Hofreiter M. 2018. Partial genomic survival of cave bears in living brown bears. Nature Ecology and Evolution, 2: 1563–1570. https://doi.org/10.1038/s41559-018-0654-8
vt. ka kommentaare:
Novaator https://novaator.err.ee/856605/teadlased-avastasid-et-jaaaegne-koopakaru-polegi-taiesti-valjasurnud
National Geographic https://www.nationalgeographic.com/science/2018/08/cave-bears-ancient-dna-paleogenomics-extinction/
NewYork Times https://www.nytimes.com/2018/08/27/science/cave-bears-dna-extinction.html
12) Kinkar L, Laurimäe T, Acosta-Jamett G, Andresiuk V, Balkaya I, Casulli A, Gasser RB, González LM, Haag KL, Zait H, Irshadullah M, Jabbar A, Jenkins DJ, Manfredi MT, Mirhendi H, M’rad S, Rostami-Nejad M, Oudni-M’rad M, Pierangeli NB, Ponce-Gordo F, Rehbein S, Sharbatkhori M, Kia EB, Simsek S, Soriano SV, Sprong H, Šnábel V, Umhang G, Varcasia A, Saarma U. 2018. Distinguishing Echinococcus granulosus sensu stricto genotypes G1 and G3 with confidence: A practical guide. Infection, Genetics and Evolution, 64: 178-184. https://doi.org/10.1016/j.meegid.2018.06.026
13) Iacolina L, Pertoldi C, Amills M, Kusza S, Megens H-J, Balteanu VA, Bakan J, Cubric-Curic V, Oja R, Saarma U, Scandura M, Šprem N, Stronen AV. 2018. Hotspots of recent hybridization between pigs and wild boars in Europe. Scientific Reports 8:17372. doi:10.1038/s41598-018-35865-8
https://www.nature.com/articles/s41598-018-35865-8
2017
1) Hindrikson M, Remm J, Pilot M, Godinho R, Stronen AV, Baltrūnaité L, Czarnomska SD, Leonard JA, Randi E, Nowak C, Åkesson M, López-Bao JV, Álvares F, Llaneza L, Echegaray J, Vilà C, Ozolins J, Rungis D, Aspi J, Paule L, Skrbinšek T, Saarma U. 2017. Wolf population genetics in Europe: a systematic review, meta-analysis and suggestions for conservation and management. Biological Reviews 92, 1601-1629.
http://dx.doi.org/10.1111/brv.12298
2) Bautista C, Naves J, Revilla E, Fernández N, Albrecht J, Scharf AK, Rigg R, Karamanlidis AA, Jerina K, Huber D, Palazón S, Kont R, Ciucci P, Groff C, Dutsov A, Seijas J, Quenette P-I, Olszańska A, Shkvyria M, Adamec M, Ozolins J, Jonozovič M, Selva N. 2017. Patterns and correlates of claims for brown bear damage on a continental scale. Journal of Applied Ecology 54, 282–292. http://dx.doi.org/10.1111/1365-2664.12708
3) Süld K, Saarma U, Valdmann H. 2017. Home ranges of raccoon dogs in managed and natural areas. PLoS ONE 12(3): e0171805.
http://dx.doi.org/10.1371/journal.pone.0171805
4) Montana L, Caniglia R, Galaverni M, Fabbri E, Ahmed A, Černá Bolfíková B, Czarnomska SD, Galov A, Godinho R, Hindrikson M, Hulva P, Jędrzejewska B, Jelenčič M, Kutal M, Saarma U, Skrbinšek T, Randi E. 2017. Combining phylogenetic and demographic inferences to assess the origin of the genetic diversity in an isolated wolf population. PLoS ONE 12(5): e0176560. https://doi.org/10.1371/journal.pone.0176560
5) Kinkar L, Laurimäe T, Sharbatkhori M, Mirhendi H, Kia EB, Ponce-Gordo F, Andresiuk V, Simsek S, Lavikainen A, Irshadullah M, Umhang G, Oudni-M’rad M, Acosta-Jamett G, Rehbein S, Saarma U. 2017. New mitogenome and nuclear evidence on the phylogeny and taxonomy of the highly zoonotic tapeworm Echinococcus granulosus sensu stricto. Infection, Genetics and Evolution 52, 52-58.
http://dx.doi.org/10.1016/j.meegid.2017.04.023
6) Värv K, Ivanova A, Geller J, Remm J, Jaik K, Tikunova N, Rar V, Lundkvist Å, Golovljova I. 2017. Identification of I. ricinus, I. persulcatus and I. trianguliceps species by multiplex PCR. Ticks and Tick-borne Diseases 8, 235-240. http://doi.org/10.1016/j.ttbdis.2016.11.004
7) Soe E, Davison J, Süld K, Valdmann H, Laurimaa L, Saarma U. 2017. Europe-wide biogeographical patterns in the diet of an ecologically and epidemiologically important mesopredator, the red fox (Vulpes vulpes): a quantitative review. Mammal Review 47, 198–211. http://dx.doi.org/10.1111/mam.12092
8) Oja R, Velström K, Moks E, Jokelainen P, Lassen B. 2017. How does supplementary feeding affect endoparasite infection in wild boar? Parasitology Research 116, 2131–2137. http://dx.doi.org/10.1007/s00436-017-5512-0
9) Süld K, Tammeleht E, Valdmann H, Saarma U. 2017. Severe impact of sarcoptic mange on the movements and space use for one of its most important vector species, the raccoon dog. Veterinary Parasitology 243, 67-70. https://doi.org/10.1016/j.vetpar.2017.05.029
10) Oja R, Soe E, Valdmann H, Saarma U. 2017. Non-invasive genetics outperforms morphological methods in dietary analysis, revealing wild boar as a considerable conservation concern for ground-nesting birds. PLoS ONE 12(6): e0179463. https://doi.org/10.1371/journal.pone.0179463
11) Hindrikson M, Möls M, Valdmann H. 2017. The patterns of wolf attacks on humans: an example from the 19th century European Russia. Baltic Forestry 23(2), 432-437.
12) Remm J, Hanski IK, Tuominen S, Selonen V. 2017. Multilevel landscape utilization of the Siberian flying squirrel: Scale effects on species habitat use. Ecology and Evolution 7, 8303–8315. doi:10.1002/ece3.3359
2016
1) Laurimaa L, Süld K, Davison J, Moks E, Valdmann H, Saarma U. 2016. Alien species and their zoonotic parasites in native and introduced ranges: the raccoon dog example. Veterinary Parasitology, 219, 24–33.
http://dx.doi.org/10.1016/j.vetpar.2016.01.020
Kommentaarid ajakirjas New Scientist
2) Rannamäe E, Lõugas L, Niemi M, Kantanen J, Maldre L, Kadõrova N, Saarma U. 2016. Maternal and paternal genetic diversity of ancient sheep in Estonia from the Bronze Age to the Post-Medieval Period, and comparison with other regions in Eurasia. Animal Genetics, 47, 208-218. http://dx.doi.org/10.1111/age.12407
3) Drygala F, Korablev N, Ansorge H, Fickel J, Isomursu M, Elmeros M, Kowalczyk R, Baltrunaite L, Balciauskas L, Saarma U, Schulze C, Borkenhagen P, Frantz AC. 2016. Homogenous population genetic structure of the non-native raccoon dog (Nyctereutes procyonoides) in Europe as a result of rapid population expansion. PLoS ONE 11(4): e0153098.
http://dx.doi.org/10.1371/journal.pone.0153098
4) Laurimaa L, Moks E, Soe E, Valdmann H, Saarma U. 2016. Echinococcus multilocularis and other zoonotic parasites in red foxes in Estonia. Parasitology, 143, 1450–1458. http://dx.doi.org/10.1017/S0031182016001013
5) Iacolina L, Brajković V, Canu A, Šprem N, Cubric-Curik V, Fontanesi L, Saarma U, Apollonio M, Scandura M. 2016. Novel Y-chromosome short tandem repeats in Sus scrofa and their variation in European wild boar and domestic pig populations. Animal Genetics, 47, 682–690.
http://dx.doi.org/10.1111/age.12483
http://onlinelibrary.wiley.com/doi/10.1111/age.12483/full
6) Plumer L, Keis M, Remm J, Hindrikson M, Jõgisalu I, Männil P, Kübarsepp M, Saarma U. 2016. Wolves recolonizing islands: genetic consequences and implications for conservation and management. PLoS ONE 11(7): e0158911. doi:10.1371/journal.pone.0158911
http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0158911
7) Kinkar L, Laurimäe T, Simsek S, Balkaya I, Casulli A, Manfredi MT, Ponce-Gordo F, Varcasia A, Lavikainen A, Gonzalez LM, Rehbein S, van der Giessen J, Sprong H, Saarma U. 2016. High-resolution phylogeography of zoonotic tapeworm Echinococcus granulosus sensu stricto genotype G1 with an emphasis on its distribution in Turkey, Italy and Spain. Parasitology, 143, 1790–1801. doi:10.1017/S0031182016001530
http://dx.doi.org/10.1017/S0031182016001530
8) Laurimäe T, Kinkar L, Andresiuk V, Haag KL, Ponce-Gordo F, Acosta-Jamett G, Garate T, Gonzalez LM, Saarma U. 2016. Genetic diversity and phylogeography of highly zoonotic Echinococcus granulosus genotype G1 in the Americas (Argentina, Brazil, Chile and Mexico) based on 8279 bp of mtDNA. Infection, Genetics and Evolution, 45, 290–296. http://dx.doi.org/10.1016/j.meegid.2016.09.015
9) Rannamäe E, Lõugas L, Speller CF, Valk H, Maldre L, Wilczyński J, Mikhailov A, Saarma U. 2016. Three Thousand Years of Continuity in the Maternal Lineages of Ancient Sheep (Ovis aries) in Estonia. PLoS ONE 11(10): e0163676. doi:10.1371/journal.pone.0163676
http://dx.doi.org/10.1371/journal.pone.0163676
2015
1) Laurimaa L, Davison J, Plumer L, Süld K, Oja R, Moks E, Keis M, Hindrikson M, Kinkar L, Laurimäe T, Abner J, Remm J, Anijalg P, Saarma U. 2015. Noninvasive detection of Echinococcus multilocularis tapeworm in urban area, Estonia. Emerging Infectious Diseases, 21: 163-164. http://dx.doi.org/10.3201/eid2101.140136
2) Marcinkute A, Šarkunas M, Moks E, Saarma U, Jokelainen P, Bagrade G, Laivacuma S, Strupas K, Sokolovas V, Deplazes P. 2015. Echinococcus infections in the Baltic region. Veterinary Parasitology, 213: 121-131. http://dx.doi.org/10.1016/j.vetpar.2015.07.032
3) Laurimaa L, Davison J, Süld K, Plumer L, Oja R, Moks E, Keis M, Hindrikson M, Kinkar L, Laurimäe T, Abner J, Remm J, Anijalg P, Saarma U. 2015. First report of highly pathogenic Echinococcus granulosus genotype G1 in dogs in European urban environment. Parasites & Vectors. 8:182. http://dx.doi.org/10.1186/s13071-015-0796-3
4) Knapp J, Gottstein B, Saarma U, Millon L. 2015. Taxonomy, phylogeny and molecular epidemiology of Echinococcus multilocularis: from fundamental knowledge to health ecology. Veterinary Parasitology, 213: 85-91. http://dx.doi.org/10.1016/j.vetpar.2015.07.030
5) Leimann A, Knuuttila A, Maran T, Vapalahti O, Saarma U. 2015. Molecular epidemiology of Aleutian mink disease virus (AMDV) in Estonia, and a global phylogeny of AMDV. Virus Research, 199: 55-61. http://dx.doi.org/10.1016/j.virusres.2015.01.011
6) Laurimaa L, Süld K, Moks E, Valdmann H, Umhang G, Knapp J, Saarma U. 2015. First report of the zoonotic tapeworm Echinococcus multilocularis in raccoon dogs in Estonia, and comparisons with other countries in Europe. Veterinary Parasitology, 212: 200-2015. http://dx.doi.org/10.1016/j.vetpar.2015.06.004
7) Oja R, Zilmer K, Valdmann H. 2015. Spatiotemporal Effects of Supplementary Feeding of Wild Boar (Sus scrofa) on Artificial Ground Nest Depredation. PLoS ONE, 10(8): e0135254. http://dx.doi.org/10.1371/journal.pone.0135254
8) Lindman L, Remm J, Saksing K, Sõber V, Õunap E, Tammaru T. 2015. Lycaena dispar on its northern distribution limit: an expansive generalist. Insect Conservation and Diversity, 8: 3-16. http://dx.doi.org/10.1111/icad.12087
9) Knuuttila A, Aaltonen K, Virtala A-M K, Henttonen H, Isomursu M, Leimann A, Maran T, Saarma U, Timonen P, Vapalahti O, Sironen T. 2015. Aleutian mink disease virus in free‐ranging mustelids in Finland ‐ a cross‐sectional epidemiologic and phylogenetic study. Journal of General Virology, 96: 1423–1435. http://dx.doi.org/10.1099/vir.0.000081
2014
1) Bidon T, Janke A, Fain SR, Eiken HG, Hagen SB, Saarma U, Hallström BM, Lecomte N, Hailer F. 2014. Brown and polar bear Y chromosomes reveal extensive male-biased gene flow within brother lineages. Molecular Biology and Evolution, 31 (6): 1353-1363. http://dx.doi.org/10.1093/molbev/msu109
2) Süld K, Valdmann H, Laurimaa L, Soe E, Davison J, Saarma U. 2014. An Invasive Vector of Zoonotic Disease Sustained by Anthropogenic Resources: The Raccoon Dog in Northern Europe. PLoS ONE 9(5): e96358. http://dx.doi.org/10.1371/journal.pone.0096358
3) Plumer L, Davison J, Saarma U. 2014. Rapid urbanization of red foxes in Estonia: distribution, behaviour, attacks on domestic animals, and health-risks related to zoonotic diseases. PLoS ONE 9(12): e115124. http://dx.doi.org/10.1371/journal.pone.0115124
4) Soon V, Budrys, E, Orlovskite S, Paukkunen J, Ødegaard F, Ljubomirov T, Saarma U. 2014. Testing the validity of Northern European species in the Chrysis ignita species group (Hymenoptera: Chrysididae) with DNA Barcoding. Zootaxa, 3786 (3): 301–330. http://dx.doi.org/10.11646/zootaxa.3786.3.4
5) Oja R, Kaasik A, Valdmann H. 2014. Winter severity or supplementary feeding - which matters more for wild boar? Acta Theriologica, 59: 553-559. http://dx.doi.org/10.1007/s13364-014-0190-0
Varasemaid publikatsioone vaata SIIT